Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs115518434 chr2:10956473 A/G 0.000218 117 42.9 38.58 62.72 KM Plot
THYM rs115521933 chr4:70056857 A/G 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs115558082 chr4:185468637 A/T 0.000304 119 41.77 33.1 NA KM Plot
THYM rs115715690 chr4:70090049 T/A 4.7E-13 119 41.77 35 6 KM Plot
THYM rs1157755 chr12:5096841 C/T 1.11E-6 119 45.87 35.4 11.58 KM Plot
THYM rs115781794 chr20:29505173 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs115848784 chr7:76127071 G/T 2.8E-5 115 32.78 45.87 39.5 KM Plot
THYM rs115923387 chr7:29720702 A/G 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs11599099 chr10:13977477 T/G 0.000296 119 48 35 12.87 KM Plot
THYM rs11599100 chr10:13977480 T/A 0.000296 119 48 35 12.87 KM Plot
THYM rs115991704 chr19:43346600 G/A 0.000134 118 44.38 26 28.43 KM Plot
THYM rs116026943 chr4:70061503 T/C 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs11602997 chr11:20022527 C/A 3.08E-6 117 42.73 29.9 13.75 KM Plot
THYM rs11603592 chr11:20023522 C/T 2.35E-6 119 42.73 29.9 13.75 KM Plot
THYM rs11604179 chr11:20024759 G/A 2.69E-6 118 42.25 29.9 13.75 KM Plot